Why DBSCAN clustering returns single cluster on Movie lens data set?

The Scenario: I'm performing Clustering over Movie Lens Dataset, where I have this Dataset in 2 formats: OLD...

HDBSCAN Python choose number of clusters

Is is possible to select the number of clusters in the HDBSCAN algorithm in python? Or the only way is to play around with the input parameters such as alpha, min_cluster_size? Thanks UPDATE: here...

How to cluster similar sentences using BERT

For ElMo, FastText and Word2Vec, I'm averaging the word embeddings within a sentence and using HDBSCAN/KMeans clustering to group similar sentences. A good example of the implementation can be...

How to evaluate HDBSCAN text clusters?

I'm currently trying to use HDBSCAN to cluster movie data. The goal is to cluster similar movies together (based on movie info like keywords, genres, actor names, etc) and then apply LDA to each...

ERROR: You must give at least one requirement to install -- when running: pip install --upgrade --no-binary hdbscan

I am trying to install hdbscan in my PC which runs Windows 10 and has installed Python 3.6. My first attempt failed: (base) C:\WINDOWS\system32>pip install hdbscan --user Collecting hdbscan ...

Is it normal to get different graphs for same data after umap

I am not sure how can I describe all the steps that I am taking but basically my question is simple: I use same code, same data from text file, gather some statistics about that data and then use...

Reduce spatial data set size using HDBSCAN

I am trying to reduce the spatial data set size by clustering them and finding the center point for the clusters. I referenced to this article (which uses DBSCAN)and it kind of helped except that...

docker container jupyter lab, how to add other packages?

I'm using docker for deep learning. and i'm super beginner as docker user. ubuntu 18.04 docker version 19.03.6 and i got ufoym/deepo image. so i'm using jupyter lab in web. container 1 : jupyter...

Problems with HDBSCAN and approximate predict

I would like to use the HDBSCAN clustering technique to predict outliers. I have trained my model to optimize the parameters, but then, when I apply approximate_predict on new data, I get...

Best way to cluster long/lat hotspot points in one city in R?

I am new to R and (unsupervised) machine learning. I'm trying to find out the best cluster solution for my data in R. What is my data about? I have a dataset with +/- 800 long / lat WGS84...

Cluster a list of geographic points by distance and constraints

I have a delivery app, and I want to group orders (each order has a lat and lng coordinates) by location proximity (linear distance) and constraints like max orders and max total products (each...

Anomalies Detection by DBSCAN

I am using DBSCAN on my training datatset in order to find outliers and remove those outliers from the dataset before training model. I am using DBSCAN on my train rows 7697 with 8 columns.Here is...

The same results in DBSCAN and HDBSCAN?

DBSCAN(epsilon, minPts = 2) is related to single linakge clustering and HDBSCAN(minPts = 2) is also related to single linkage clustering. My question is that: how I can obtain the same clustering...

HDBSCAN cluster caching and persistance

HDBSCAN has a flag to cache its cluster data as a param like mentioned below: prediction_data :boolean, optional Whether to generate extra cached data for predicting labels or membership vectors...

Python 3.7.4 .....Unable to install hdbscan

I'm trying to install hdbscan in Jupyter Notebook,but nothing happens ( pip install hdbscan ), pip is up to date, python version: 3.7.4. Then I tried installing hdbscan on Pycharm, it shows...

Clustering with unknown number of clusters in Spark

I have a very large dataset (about 3.5M) of text messages. I am using tf-idf vector to represent each message in this dataset. I want to cluster the messages of the same topic together and I don't...

python pip install could not build wheels, needs c++ build tools

I'm trying to set up some python dependencies for a dockerfile. I am completely new to docker, so probably will struggle to understand unless it is dumbed down a bit for me. To get my...

DBSCAN or HDBSCAN is better option? and why?

which clustering method is considered to be the best among DBSCAN and HDBSCAN and what is the reason behind that?

PackagesNotFoundError: The following packages are not available from current channels. How to solve?

Since I'm new to the field, I'm posing this question, although there are already some partial answers. I don't know the concrete solution to my problem. I'm trying to install dependencies for...

Trouble installing turbodbc

I am attempting to install turbodbc on my Ubuntu 20.10 machine. My specs are as follows: pip 20.2.4, Python 3.8.5 , gcc (Ubuntu 10.2.0-13ubuntu1) 10.2.0 I have attempted the solutions provided in...

Poetry doesn`t use system-global Cython for compiling dependencies from source

I have a dependency package hdbscan that is compiled from source and requires a Cython to be present. Now, the dependencies are managed through Poetry, and it seems that while compiling hdbscan it...

hdbscan error when inside rapids container

I am using rapids UMAP in conjunction with HDBSCAN inside a rapidsai docker container : rapidsai/rapidsai-core:0.18-cuda11.0-runtime-ubuntu18.04-py3.7 import cudf import cupy from cuml.manifold...

Issue with hdbscan (ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 88 from C header, got 80 from PyObject)

I know a number of people have posted about this before but I still can't resolve my error. I'm trying to import hdbscan but it keeps returning the following...

how do I solve " Failed building wheel for hdbscan "?

I tried to download Hdbscan using pip install hdbscan , I get this : ERROR: Failed building wheel for hdbscan ERROR: Could not build wheels for hdbscan which use PEP 517 and cannot be installed...

HDBSCAN difference between parameters

I'm confused about the difference between the following parameters in HDBSCAN min_cluster_size min_samples cluster_selection_epsilon Correct me if I'm wrong. For min_samples, if it is set to 7,...

Clustering with UMAP and HDBScan

I have a somewhat large amount of textual data, input by approximately 5000 people. I've assigned each person a vector using Doc2vec, reduced to two dimensions using UMAP and highlighted groups...

HDBSCAN: ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 88 from C header, got 80 from PyObject

I try to inititialize HDBSCAN for clustering in JupytherLab. I use Python 3.7.6.. import numpy as np import pandas as pd from sklearn.datasets import load_digits from sklearn.manifold import...

Trouble installing hdbscan package for python : "no module named 'hdbscan'" error

I want to run an algorithm written in Python on my Ubuntu virtual machine. It needs to import the hdbscan module. I thus want to install it on my virtual machine. Following the documentationfrom...

BrokenProcessPool: A task has failed to un-serialize. Please ensure that the arguments of the function are all picklable

I am using BERTopic to perform the topic modelling on 174,827 rows by using the following commands: from bertopic import BERTopic topic_model = BERTopic(language="english",...

Python package installs globally but fails within virtual environment

Im new to Python and struggling to understand the different ways to install packages. Im on MacOS Catalina. I tried installing a Python package CytoPy (https://github.com/burtonrj/CytoPy) in the...