Scripting LMMS from Python

Recently I asked about scripting FruityLoops or Reason from Python, which didn't turn up much. Today I found LMMS, a free-software FruityLoops clone. So, similarly. Has anyone tried scripting this...

Zsh Package Suggestion

I've just migrated to Zsh from Bash, but I have a bit of a problem in it. In bash on an Ubuntu system, when I type the name of a command which does not exist, Bash searches the apt database for a...

Independent binary variable (frequency) and continuous response variable - lmm

I've spent a lot of time searching for a solution but not successfully. For that reason I decided to post my problem or question here hoping somebody of you can help me. I want to find out which...

random effects variance of intercept being zero

I am running a power analysis using a normal LMM in R. I have seven input parameters, two of which I do not need to test for (no. of years and no. of sites). The other 5 parameters are the...

Bootstrap dropdown item in navbar not showing DIV after clicking href=#

I created a navbar with tabs. I can click the tabs and show the content of a . I also created a dropdown in the same navbar. Click on a item in the dropdown list doesn't work. I checked several...

How to plot predicted values with standard errors for lmer model results?

I have a transplant experiment for four locations and four substrates (taken from each location). I have determined survival for each population in each location and substrate combination. This...

Increase number of columns filled in as row number increases

I am writing a program to fill in a matrix (I use the dlib library but not relevant to the question. In the following my goal is for rows 1-19 (row indices 0-18) for one additional column to fill...

UPDATE SQL not working on Node-RED Bluemix

I've a Node-RED application that has a UPDATE statement that only works the first time after Node-RED deployment, on additional executions UPDATE isn't "committed". Table in SQL DB ("SQL DB...

Repeated effect LMM in R

Until recently I used SPSS for my statistics, but since I am not in University any more, I am changing to R. Things are going well, but I can't seem to replicate the results I obtained for...

using profile and boot method within confint option, with glmer model

I am using glmer with a logit link for a gaussian error model. When I try obtaining the confidence intervals, using either profile or the boot method with the confint option, I obtain an error for...

pyplot.show() doesn't work when importing a certain function

Importing the function single_snp from Microsoft's program "FaSTLMM" prevents python2.7 from displaying matplotlib plots. The plot is correctly displayed when omitting the import. How does...

JavaFX drag adjustable Label like Slider

Edit:Code is available on github(https://github.com/goxr3plus/DragAdjustableLabel) Question I made a custom control in javaFX which I don't know how to name it. It actually does not exist in the...

2x2 linear mixed effects model

I am not sure which one out of these 2 ways, if any, is the correct way of structuring the brackets for random effect in 2x2 LMM. My IVs are source and cnd and the DV is firstfix. one <-...

django error for no reverse match

So I am teaching myself Django and had a good project going for awhile. I tried to add a registration module and set it up so that you could register for the site and only those who were logged in...

ERROR: Allocate: can't check in named futex name = jack_sem.system err = Permission denied

The jack audio server recently stopped working on my computer. I've searched online for about 2 hours now and I cannot find any solutions for the error I'm having. Here is the error log: Fri Dec ...

Nested random effects in `lme {nlme}`

I have to fit an LMM with an interaction random effect but without the marginal random effect, using the lme command. That is, I want to fit the model in oats.lmer (see below) but using the...

WAV file headers reporting incorrect size

When decoding a WAV file I'm able to read from the header the following values (formatted neatly): Channels: 2 BitDepth: 16 SampleRate: 44100 FileSize: 907346 FileType: RIFF AudioFileType:...

How to force all treatments to have same intercept in lme4?

This is my first time posting here, so I hope my question isn't foolish, although I fear it has no answer. I ran a feeding trial where I fed snails one of five different algae species, then...

Interaction of random slopes in mixed-effects models in Julia

Is it possible to have interactions of random effects in LMM fit in Julia? This gives an error model = fit!(lmm(@formula(response ~ 1 + A*B + (1+A*B|sub)), data) ERROR: MethodError: no method...

DotNetNuke robots.txt not being honored by google bots

I have a multiple portal dotnetnuke install: domain1.com domain2.com domain3.com etc Server is 32 gigs, 8 cores. I have a single robots.txt file. When google starts crawling, I see the...

Planned Contrasts on glmmTMB

Apologies if this is a repeat question. Many have posted looking looking for a way to do post-hoc analyses on the conditional model (fixed factors) in glmmTMB. I want to do plannned contrasts...

Cholesky transformed residuals in lmer

I am currently working with linear mixed models (LMM) and want to perform some residual analyses. Since the residuals from linear mixed models "are correlated and do not necessarily have constant...

Why I got different R2 between the predicted and actual data in test dataset in h2o and caret::R2()?

I would like to get R2 between the predicted and actual data in test dataset, why the result from h2o.performance(m, test) is different from caret::R2() or a 'lm' model? 'h2o.performance(m, ...

Tukey test after LMM keeping contrasts

I want to test a 2x3 factorial design and contrasted the variables like this library(lme4) library(emmeans) my.helmert = matrix(c(2, -1, -1, 0, -1, 1), ncol = 2) ...

Problems linking Nlopt-2.4.2 in visual studio 2017

Some back story: I am trying to get the bolt-lmm software to compile on a Windows machine, because it would be a nice addition to the research group I am in. The developers of the software have...

Serial communication between python, arduino and hairless MIDI

I want to send a message from python via serial to arduino uno and then from arduino to hairless MIDI to control LMMS software. The problem is that the communication in both cases goes through...

LMM model with nested design and random slopes (nlme package) cannot run with autocorrelation term

Despite many efforts, I cannot run a linear mixed model because of the autocorrelation term. In fact, I can't manage to code for both a nested design and random slopes within it. For example,...

How can I get the Laravel 7 Homestead database snapshots working?

I've enjoyed Homestead for years and today noticed a very appealing feature that I've never used before. https://laravel.com/docs/7.x/homestead#database-snapshots says: Homestead supports...

Post-hoc test for LMM with interaction terms

I've defined an lmer model in R with 2 fixed interacting effects, and three random effects. The first fixed effect, 'A' is categorical, whilst the second fixed effect 'B' is...

! Undefined control sequence. with R/Rmarkdown/knitr

I'm new here, but I've spend few hours on R. I am using a combination of the R package Drake with knitr. However I have an error with the Rmarkdown file. I have a similar structure to the drake...